Added network storage, added water routine

water.md

+# Measuring samples in water with ISQ
+Water is a bit problematic solvent for ISQ but measurements in it can be done! It only takes a bit longer and you will need to use different procedure!
+
+### How to measure water samples?
+ * Do not forget to book some extra time
+ * Instead of the normal procedure you will use the procedure for water.
+
+**add picture here**
+
+First and last line of the water template flushes the system to the water and then from the water to generally more accepted solvent - methanol.
+
+### Why water is special?
+Water mixes exothermically with other solvents like methanol or acetonitrile. To prove my point this is how it looks when you are going from methanol to water and back:
+
+**add picture here**
+
+Flow was set to **0.5 ml/min**, water has started to be pumped at 5th minute. You see that the pressure raises sharply around 6th minute (0.5 ml dead volume) and then it slowly drops in course of approximately 5 minutes (2.5 ml volume before flushing MeOH). The same applies for the change back from water to methanol. The pressures are lower for the normal operating flow of 0.2 ml/min.

waterpics/picgen.py

+#!/usr/bin/env python3
+from matplotlib.backends.backend_qt5agg import\
+        FigureCanvasQTAgg as FigureCanvas
+from matplotlib.figure import Figure
+from matplotlib.patches import Rectangle as rect
+from PyQt5 import QtGui
+from PyQt5 import QtWidgets
+from PyQt5 import QtCore
+import numpy as np
+import pandas as pd
+import sys
+
+
+def load_file(fn):
+    a = np.asarray(pd.read_table(
+                   fn, delim_whitespace=True, skiprows=43, header=None,
+                   names=("Time (min)", "step (ignore)", "Pressure (bar)"))
+                   [['Time (min)','Pressure (bar)']]).T
+
+    return a[0], a[1]
+
+
+def populate(datas, plot, style):
+    #plot.plot(datas[0], datas[1], color=(0,0.9,0,1))
+    plot.plot(datas[0], datas[1], linewidth=0.8, **style)
+    return 0
+
+
+def main(pathprefix, files, styles, outname, index):
+    app = QtWidgets.QApplication(sys.argv)
+    graph = Figure(figsize=(5,2), dpi=100, facecolor="None",
+            constrained_layout=True)
+    spectra = graph.subplots(1,1, subplot_kw={"facecolor": (1, 1, 1, 0)})
+    canvas = FigureCanvas(graph)
+    canvas.setStyleSheet("background-color:transparent;")
+    canvas.setAutoFillBackground(False)
+    spectra.set_xlabel("Time (min)", )
+    spectra.set_ylabel("Pressure (bar)")
+    #spectra.set_xticks(np.linspace(100,200,6))
+    #spectra.set_xlim(0,40)
+    spectra.set_ylim(-1,50)
+    #spectra[0].set_yticks(np.linspace(1,8,8))
+        #spectrum.set_ylim(0.9,100000)
+    spectra.minorticks_on()
+    spectra.grid(True)
+    spectra.grid(True, 'minor', linewidth='0.2')
+
+
+    main_window = QtWidgets.QMainWindow(windowTitle="VSWR view")
+    for name, style in zip(files, styles):
+        datas = load_file(pathprefix+name)
+        populate(datas, spectra, style)
+    spectra.legend(loc=2)
+    spectra.axvline(5, color="#FF000088", linestyle=":")
+    spectra.axvline(10, color="#FF000088", linestyle=":")
+    spectra.add_patch(rect((-10,-10),15,80,fc="#FFCC0022"))
+    spectra.add_patch(rect((5,-10),5,80,fc="#0000FF10"))
+    spectra.add_patch(rect((10,-10),12,80,fc="#FFCC0022"))
+    spectra.annotate('$100\%\ MeOH$', (0,5), color="#884400FF")
+    spectra.annotate('$100\%\ H_2O$', (6.25,5), color="#0000AAFF")
+    spectra.annotate('$100\%\ MeOH$', (11.25,5), color="#884400FF")
+
+    graph.savefig(outname+".jpg", dpi=300)
+    graph.savefig(outname+".png", dpi=300)
+    pixmap=QtGui.QPixmap(outname+".png")
+    label = QtWidgets.QLabel(alignment=QtCore.Qt.AlignCenter)
+    main_window.setCentralWidget(label)
+    main_window.resizeEvent = lambda x: label.setPixmap(
+            pixmap.scaled(x.size(), QtCore.Qt.KeepAspectRatio,
+                          QtCore.Qt.SmoothTransformation))
+    main_window.show()
+    sys.exit(app.exec_())
+    return
+
+
+if __name__ == "__main__":
+    index = "b)"
+    pathprefix = ''
+    files = ['watertest.txt']
+    styles = [{'color': (0.3, 0, 0.5, 1), 'ls': '-', 'label': "mixing pressure"}]
+    outname = 'mixing_chart'
+    main(pathprefix, files, styles, outname, index)