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Introduction of this ReadMe file

This artefact contains an implementation of the formal abstraction methods proposed in the following papers:

This repository contains all code and instructions that are needed to replicate the results presented in the paper. Our simulations ran on a Linux machine with 32 3.7GHz cores and 64 GB of RAM.

Python version: 3.8.8. For a list of the required Python packages, please see the requirements.txt file.


Table of contents


Installation and execution of the program

Important note: the PRISM version that we use only runs on MacOS or Linux.

We recommend using the artefact on a virtual environment, in order to keep things clean on your machine. Here, we explain how to install the artefact on such a virtual environment using Conda. Other methods for using virtual environments exist, but we assume that you have Python 3 installed (we tested with version 3.8.8).

1. Create virtual environment

To create a virtual environment with Conda, run the following command:

$ conda create --name abstract_env

Then, to activate the virtual environment, run:

$ conda activate abstract_env

2. Install dependencies

In addition to Python 3, a number of dependencies must be installed on your machine:

  1. Git - Can be installed using the command:

    $ sudo apt update 
    $ sudo apt install git
  2. Java Development Kit (required to run PRISM) - Can be installed using the commands:

    $ sudo apt install default-jdk
  3. PRISM (iMDP branch) - In the desired PRISM installation folder, run the following commands:

    $ git clone -b imc https://github.com/davexparker/prism prism-imc
    $ cd prism-imc/prism; make

    For more details on using PRISM, we refer to the PRISM documentation on https://www.prismmodelchecker.org

3. Copy artefact files and install packages

Download and extract the artefact files to a folder on the machine with writing access (needed to store results).

Open a terminal and navigate to the artefact folder. Then, run the following command to install the required packages:

$ pip3 install -r requirements.txt

Please checkout the file requirements.txt to see the full list of packages that will be installed.

4. Set path to PRISM

To ensure that PRISM can be found by the script, you need to modify the path to the PRISM folder in the path_to_prism.txt file. Set the PRISM folder to the one where you installed it (the filename should end with /prism/, such that it points the folder in which the bin/ folder is located), and save your changes. For example, the path to PRISM can look as follows:

/home/<location-to-prism>/prism-imc/prism/

How to run for a single model?

An example of running the program is as follows:

$ python3 RunFile.py --model UAV --UAV_dim 3 --noise_samples 6400 --noise_factor 1 --nongaussian_noise --monte_carlo_iter 1000 --x_init '[-14,0,6,0,-2,0]' --plot

This runs the 3D UAV benchmark from the paper, with N=6400 (non-Gaussian) noise samples, and Monte Carlo simulations enabled.

All results are stored in the output/ folder. When running RunFile.py for a new abstraction, a new folder is created that contains the application name and the current datetime, such as Ab_UAV_09-21-2022_17-31-20/. For every iteration, a subfolder is created, inwhich all results specific to that single iteration are saved. This includes:

  • The PRISM model files (namely a .lab, .sta, and .tra file).
  • An Excel file that describes all results, such as the optimal policy, model size, run times, etc., of the current iteration.
  • Various plots, showing the appropriate results for the current iteration.

How to run experiments from the paper?

The figures and tables in the experimental section of the paper can be reproduced by running the shell script run_experiments.sh in the root folder of the repository:

bash run_experiments.sh

What arguments can be passed?

Below, we list all arguments that can be passed to the command for running the program. Arguments are given as --<argument name> <value>. Note that only the model argument is required; all others are optional (and have certain default values).

Argument Required? Default Type Description
model Yes N/A str Name of the model to load
mdp_mode No interval str If estimate, a point estimate MDP abstraction is created; if interval, a robust interval MDP abstraction is created
abstraction_type No default str If default, no epistemic uncertainty is considered; if epistemic, epistemic uncertainty is considered next to stochastic noise
noise_samples No 20000 int Number of noise samples to use for computing transition probability intervals
confidence No 1e-8 float Confidence level on individual transitions
sample_clustering No 1e-2 float Distance at which to cluster (merge) similar noise samples
prism_java_memory No 1 int Max. memory usage by JAVA / PRISM
iterations No 1 int Number of repetitions of computing iMDP probability intervals
nongaussian_noise No False Boolean (no value) If argument --nongaussian_noise is passed, use non-Gaussian noise samples (used for UAV benchmark)
monte_carlo_iter No 0 int Number of Monte Carlo simulations to perform
plot No False Boolean (no value) If argument --plot is passed, plots are created in general
partition_plot No False Boolean (no value) If argument --partition_plot is passed, create partition plot
x_init No [] List Initial state for Monte Carlo simulations
verbose No False Boolean (no value) If argument --verbose is passed, more verbose output is provided by the script

Ancillary scripts

In addition to the main Python program which is executed using SBA-RunFile.py, there are two ancillary scripts contained in the folder:

MatLab code to tabulate probability intervals

We provide a convenient MatLab script, called Tabulate-RunFile.m, which can be used to tabulate all possible transition probability intervals for a given value of N (total number of samples) and beta (the confidence level). For more details on how the transition probability intervals are computed, please consult the main paper (and in particular Theorem 1).

For every combination of N and beta, the script creates a .csv file, that contains the tabulated transition probability intervals, e.g., named probabilityTable_N=3200_beta=0.01.csv. When running the main Python program for these values of N and beta, the tabulated data is loaded into Python, to compute the transition probability intervals of the interval MDP.